Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs4809430 | chr20:61493572 | A/G | 3.16E-6 | 399 | 15.67 | 15.13 | 5.5 | KM Plot |
| LGG | rs4809432 | chr20:61495984 | A/T | 5.97E-6 | 407 | 15.6 | 15.67 | 5.1 | KM Plot |
| LGG | rs4818883 | chr21:45572368 | T/C | 9.55E-14 | 402 | 3.15 | 12.87 | 15.6 | KM Plot |
| LGG | rs4819382 | chr21:45566868 | A/G | 3.58E-6 | 407 | 4.43 | 15.33 | 15.47 | KM Plot |
| LGG | rs4833842 | chr4:123627821 | C/T | 9.06E-6 | 407 | 15.6 | 14.2 | 5.97 | KM Plot |
| LGG | rs4842922 | chr15:84560692 | C/T | 0.000113 | 390 | 15.97 | 13.2 | 18.27 | KM Plot |
| LGG | rs4880763 | chr10:1147045 | G/A | 1.16E-5 | 390 | 16.47 | 14.53 | 7.18 | KM Plot |
| LGG | rs4881051 | chr10:3038065 | G/T | 1.06E-6 | 407 | 15.35 | 14.42 | 10.93 | KM Plot |
| LGG | rs4881369 | chr10:4925714 | T/C | 0.000121 | 407 | 18.27 | 15.52 | 15.18 | KM Plot |
| LGG | rs4899489 | chr14:74484401 | T/C | 1.44E-7 | 397 | 6.83 | 21.55 | 15.15 | KM Plot |
| LGG | rs4903176 | chr14:74543883 | T/C | 1.24E-7 | 402 | 6.83 | 19.77 | 14.93 | KM Plot |
| LGG | rs4903177 | chr14:74544581 | C/G | 1.12E-7 | 407 | 6.83 | 19.1 | 14.92 | KM Plot |
| LGG | rs4903517 | chr14:77385122 | A/G | 8.33E-8 | 407 | 13.02 | 17.73 | 14.78 | KM Plot |
| LGG | rs4905014 | chr14:93412031 | C/G | 1.11E-5 | 407 | 15.73 | 10.48 | 4.07 | KM Plot |
| LGG | rs4915218 | chr1:201110954 | A/G | 8.28E-6 | 405 | 9.28 | 15.35 | 15.3 | KM Plot |